GEMS Publications

The following is a list of publications sorted chronologically.

2008

• P. Brenner, J. M. Wozniak, D. Thain, A. Striegel, and J. A. Izaguirre. "Biomolecular committor probability calculation enabled by processing in network storage," Parallel Computing (accepted), 2008. [PDF]
• J. M. Wozniak, P. Brenner, D. Thain, A. Striegel, and J. A. Izaguirre. "Making the Best of a Bad Situation: Prioritized Storage Management in GEMS," Future Generation Computer Systems, 24(1), 2008. [PDF]

2007

• J. M. Wozniak. "Overdrive controllers for distributed scientific computation," Proc. TCSC Doctoral Symposium, IEEE Computer Society, May 2007. [PDF]
  Slides: [PDF]
• P. Brenner, J. M. Wozniak, D. Thain, A. Striegel, J. W. Peng, and J. A. Izaguirre. "Biomolecular path sampling enabled by processing in network storage," Proc. Workshop on High Performance Computational Biology, IEEE Computer Society, March 2007. [PDF]
  Slides: [PDF]

2006

• J. M. Wozniak, P. Brenner, D. Thain, A. Striegel, and J. A. Izaguirre, "Access control for a replica management database," Proc. Workshop on Storage Security and Survivability, October 2006. [PDF]
  Slides: [PDF]

• J. M. Wozniak, P. Brenner, D. Thain, A. Striegel, and J. A. Izaguirre, "Applying feedback control to a replica management system," Proc. Southeastern Symposium on System Theory, March 2006. [PDF]
  Slides: [PDF]

2005

• J. M. Wozniak, P. Brenner, D. Thain, A. Striegel, and J. A. Izaguirre, "Browsing molecules in GEMS," Presented at I-Light Symposium, August 2005.
  Slides: [PDF]
  
• J. M. Wozniak, P. Brenner, D. Thain, A. Striegel, and J. A. Izaguirre, "Generosity and gluttony in GEMS: Grid Enabled Molecular Simulation," Proc. High Performance Distributed Computing , July 2005. [PDF]
  Slides: [PDF]